No. words: 1022; after pruning: 968


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.5 (1,1:344)  315  0.29 0.00 0.87  UCD006R_F04_BE499144LD06P001D02P001D081F1_022.ab1        1   346 (190)  C UCD006F_F04_BE499144LD06P001D02P001D081F1_022.ab1   (142)   344     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1  C UCD006F_F04_BE499144LD06P001D02P001D081F1_022.ab1   486 
  186    UCD006R_F04_BE499144LD06P001D02P001D081F1_022.ab1    44 
  202  C UCD006F_F04_BE499144LD06P001D02P001D081F1_022.ab1   285 
  250    UCD006R_F04_BE499144LD06P001D02P001D081F1_022.ab1   108 
  270  C UCD006F_F04_BE499144LD06P001D02P001D081F1_022.ab1   217 
  334    UCD006R_F04_BE499144LD06P001D02P001D081F1_022.ab1   192 
  338  C UCD006F_F04_BE499144LD06P001D02P001D081F1_022.ab1   149 
  358    UCD006R_F04_BE499144LD06P001D02P001D081F1_022.ab1   216 
  426  C UCD006F_F04_BE499144LD06P001D02P001D081F1_022.ab1    61 
  434    UCD006R_F04_BE499144LD06P001D02P001D081F1_022.ab1   292 
Contig length: old 677, new 678

Contig length: old 678, new 677
New start: 0 
D Change at: 480; seg lengths: entry 3, contig 4
S Change at: 505; seg lengths: entry 1, contig 1