No. words: 1047; after pruning: 993


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.6 (1,1:356)  324  0.28 0.00 0.84  UCD006R_A05_BE499144LD09P001D02P001D081F1_047.ab1        1   358 (191)  C UCD006F_A05_BE499144LD09P001D02P001D081F1_047.ab1   (142)   356     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1  C UCD006F_A05_BE499144LD09P001D02P001D081F1_047.ab1   498 
  322    UCD006R_A05_BE499144LD09P001D02P001D081F1_047.ab1   180 
  326  C UCD006F_A05_BE499144LD09P001D02P001D081F1_047.ab1   173 
  338    UCD006R_A05_BE499144LD09P001D02P001D081F1_047.ab1   196 
  374  C UCD006F_A05_BE499144LD09P001D02P001D081F1_047.ab1   125 
  382    UCD006R_A05_BE499144LD09P001D02P001D081F1_047.ab1   240 
  438  C UCD006F_A05_BE499144LD09P001D02P001D081F1_047.ab1    61 
  446    UCD006R_A05_BE499144LD09P001D02P001D081F1_047.ab1   304 
Contig length: old 690, new 691

Contig length: old 691, new 690
New start: 0 
D Change at: 492; seg lengths: entry 3, contig 4
S Change at: 518; seg lengths: entry 1, contig 1