No. words: 1047; after pruning: 993


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.7 (1,1:358)  334  0.28 0.00 0.28  UCD006R_B05_BE499144LD10P001D02P001D081F1_045.ab1        1   358 (189)  C UCD006F_B05_BE499144LD10P001D02P001D081F1_045.ab1   (142)   358     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C UCD006F_B05_BE499144LD10P001D02P001D081F1_045.ab1   500 
  198    UCD006R_B05_BE499144LD10P001D02P001D081F1_045.ab1    56 
  202  C UCD006F_B05_BE499144LD10P001D02P001D081F1_045.ab1   299 
  242    UCD006R_B05_BE499144LD10P001D02P001D081F1_045.ab1   100 
  250  C UCD006F_B05_BE499144LD10P001D02P001D081F1_045.ab1   251 
  262    UCD006R_B05_BE499144LD10P001D02P001D081F1_045.ab1   120 
  282  C UCD006F_B05_BE499144LD10P001D02P001D081F1_045.ab1   219 
  326    UCD006R_B05_BE499144LD10P001D02P001D081F1_045.ab1   184 
  438  C UCD006F_B05_BE499144LD10P001D02P001D081F1_045.ab1    63 
  446    UCD006R_B05_BE499144LD10P001D02P001D081F1_045.ab1   304 
Contig length: old 688, new 689

Contig length: old 689, new 688
New start: 0 
D Change at: 492; seg lengths: entry 3, contig 4
S Change at: 517; seg lengths: entry 1, contig 1