No. words: 1173; after pruning: 1147


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:543)  539  0.18 0.00 0.00  UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1        1   544 (47)  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   (38)   544     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   582 
   50    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1    12 
   58  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   525 
   62    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1    24 
   70  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   513 
   74    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1    36 
   78  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   505 
   82    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1    44 
  154  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   429 
  162    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   124 
  202  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   381 
  394    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   356 
  410  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   173 
  434    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   396 
  438  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   145 
  454    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   416 
  458  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   125 
  466    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   428 
  470  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1   113 
  490    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   452 
  494  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1    89 
  498    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   460 
  510  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1    73 
  514    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   476 
  518  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1    65 
  534    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   496 
  538  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1    45 
  546    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   508 
  550  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1    33 
  558    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   520 
  574  C UCD005R_F02_BE499251AT01P012D03D091R1_006.ab1     9 
  578    UCD005F_F02_BE499251AT01P012D03D091F1_006.ab1   540 
Contig length: old 629, new 629

Contig length: old 629, new 629
New start: 0