No. words: 1032; after pruning: 1006


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:438)  436  0.00 0.00 0.00  UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1        1   439 (80)  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   (74)   439     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   513 
  102    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1    28 
  106  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   408 
  110    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1    36 
  122  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   392 
  166    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1    92 
  174  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   340 
  218    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   144 
  230  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   284 
  234    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   160 
  242  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   272 
  250    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   176 
  262  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   252 
  266    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   192 
  278  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   236 
  282    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   208 
  290  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   224 
  298    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   224 
  306  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   208 
  310    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   236 
  314  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   200 
  318    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   244 
  322  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   192 
  338    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   264 
  342  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   172 
  346    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   272 
  378  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   136 
  382    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   308 
  402  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1   112 
  410    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   336 
  422  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1    92 
  434    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   360 
  450  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1    64 
  458    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   384 
  462  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1    52 
  466    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   392 
  478  C UCD005R_G02_BE499251AT02P012D03D091R1_004.ab1    36 
  486    UCD005F_G02_BE499251AT02P012D03D091F1_004.ab1   412 
Contig length: old 593, new 593

Contig length: old 593, new 593
New start: 0