No. words: 1350; after pruning: 1310


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:520)  517  0.00 0.00 0.00  UCD007F_B02_BE499251LD01P012D03P012D091F1_014.ab1        1   521 (119)  C UCD007R_B02_BE499251LD01P012D03P012D091R1_014.ab1   (189)   521     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C UCD007R_B02_BE499251LD01P012D03P012D091R1_014.ab1   710 
  209    UCD007F_B02_BE499251LD01P012D03P012D091F1_014.ab1    20 
  213  C UCD007R_B02_BE499251LD01P012D03P012D091R1_014.ab1   498 
  381    UCD007F_B02_BE499251LD01P012D03P012D091F1_014.ab1   192 
  673  C UCD007R_B02_BE499251LD01P012D03P012D091R1_014.ab1    38 
  677    UCD007F_B02_BE499251LD01P012D03P012D091F1_014.ab1   488 
Contig length: old 829, new 829

Contig length: old 829, new 829
New start: 0 
S Change at: 136; seg lengths: entry 1, contig 1