No. words: 1343; after pruning: 1303


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:517)  514  0.00 0.00 0.00  UCD007F_C02_BE499251LD02P012D03P012D091F1_012.ab1        1   518 (117)  C UCD007R_C02_BE499251LD02P012D03P012D091R1_012.ab1   (190)   518     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCD007R_C02_BE499251LD02P012D03P012D091R1_012.ab1   708 
  262    UCD007F_C02_BE499251LD02P012D03P012D091F1_012.ab1    72 
  270  C UCD007R_C02_BE499251LD02P012D03P012D091R1_012.ab1   439 
  462    UCD007F_C02_BE499251LD02P012D03P012D091F1_012.ab1   272 
Contig length: old 825, new 825

Contig length: old 825, new 825
New start: 0 
S Change at: 132; seg lengths: entry 1, contig 1