No. words: 1346; after pruning: 1292


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:516)  513  0.00 0.00 0.00  UCD007F_D02_BE499251LD03P012D03P012D091F1_010.ab1        1   517 (119)  C UCD007R_D02_BE499251LD03P012D03P012D091R1_010.ab1   (193)   517     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCD007R_D02_BE499251LD03P012D03P012D091R1_010.ab1   710 
  209    UCD007F_D02_BE499251LD03P012D03P012D091F1_010.ab1    16 
  213  C UCD007R_D02_BE499251LD03P012D03P012D091R1_010.ab1   498 
  265    UCD007F_D02_BE499251LD03P012D03P012D091F1_010.ab1    72 
  273  C UCD007R_D02_BE499251LD03P012D03P012D091R1_010.ab1   438 
  465    UCD007F_D02_BE499251LD03P012D03P012D091F1_010.ab1   272 
  669  C UCD007R_D02_BE499251LD03P012D03P012D091R1_010.ab1    42 
  677    UCD007F_D02_BE499251LD03P012D03P012D091F1_010.ab1   484 
Contig length: old 829, new 829

Contig length: old 829, new 829
New start: 0 
S Change at: 63; seg lengths: entry 1, contig 1
S Change at: 135; seg lengths: entry 1, contig 1