No. words: 1156; after pruning: 1130


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:514)  511  0.00 0.00 0.00  UCD007F_E02_BE499251LD04P012D03P012D091F1_008.ab1        1   515 (85)  C UCD007R_E02_BE499251LD04P012D03P012D091R1_008.ab1   (41)   515     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCD007R_E02_BE499251LD04P012D03P012D091R1_008.ab1   556 
   45    UCD007F_E02_BE499251LD04P012D03P012D091F1_008.ab1     4 
   49  C UCD007R_E02_BE499251LD04P012D03P012D091R1_008.ab1   508 
   53    UCD007F_E02_BE499251LD04P012D03P012D091F1_008.ab1    12 
  181  C UCD007R_E02_BE499251LD04P012D03P012D091R1_008.ab1   376 
  313    UCD007F_E02_BE499251LD04P012D03P012D091F1_008.ab1   272 
  425  C UCD007R_E02_BE499251LD04P012D03P012D091R1_008.ab1   132 
  457    UCD007F_E02_BE499251LD04P012D03P012D091F1_008.ab1   416 
  469  C UCD007R_E02_BE499251LD04P012D03P012D091R1_008.ab1    88 
  501    UCD007F_E02_BE499251LD04P012D03P012D091F1_008.ab1   460 
  509  C UCD007R_E02_BE499251LD04P012D03P012D091R1_008.ab1    48 
  525    UCD007F_E02_BE499251LD04P012D03P012D091F1_008.ab1   484 
  529  C UCD007R_E02_BE499251LD04P012D03P012D091R1_008.ab1    28 
  533    UCD007F_E02_BE499251LD04P012D03P012D091F1_008.ab1   492 
  545  C UCD007R_E02_BE499251LD04P012D03P012D091R1_008.ab1    12 
  553    UCD007F_E02_BE499251LD04P012D03P012D091F1_008.ab1   512 
Contig length: old 641, new 641

Contig length: old 641, new 641
New start: 0