No. words: 730; after pruning: 704


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -3.5 -3.5 (1,1:315)  203  9.87 0.32 0.64  UCD033F_H02_BE499251Sn26P012D03P025C071F1_002.ab1        4   317 (60)  C UCD033R_H02_BE499251Sn26P012D03P025C071R1_002.ab1   (40)   313     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -9.3 (<20 part: -9.3 (#=34), >20:0.0 (#=0); in HQ: -9.3, out HQ 0.0), match: 6.3  lead: -0.5  total: -3.5  203  9.87 0.32 0.64  UCD033F_H02_BE499251Sn26P012D03P025C071F1_002.ab1        4   317 (60)  C UCD033R_H02_BE499251Sn26P012D03P025C071R1_002.ab1   (40)   313     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.5       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  88 nodes

 46 str. conn. components

Path
    1  C UCD033R_H02_BE499251Sn26P012D03P025C071R1_002.ab1   353 
   55    UCD033F_H02_BE499251Sn26P012D03P025C071F1_002.ab1    17 
  121  C UCD033R_H02_BE499251Sn26P012D03P025C071R1_002.ab1   233 
  125    UCD033F_H02_BE499251Sn26P012D03P025C071F1_002.ab1    87 
  162  C UCD033R_H02_BE499251Sn26P012D03P025C071R1_002.ab1   192 
  213    UCD033F_H02_BE499251Sn26P012D03P025C071F1_002.ab1   175 
  217  C UCD033R_H02_BE499251Sn26P012D03P025C071R1_002.ab1   137 
  345    UCD033F_H02_BE499251Sn26P012D03P025C071F1_002.ab1   308 
Contig length: old 414, new 414

Contig length: old 414, new 415
New start: 0 
S Change at: 169; seg lengths: entry 2, contig 2
S Change at: 174; seg lengths: entry 1, contig 1
I Change at: 329; seg lengths: entry 4, contig 3