No. words: 553; after pruning: 527


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -2.1 -2.1 (1,1:365)   72 14.39 0.00 0.00  UCD033F_D03_BE499251Sn30P012D03P025C071F1_025.ab1        4   135 (0)  C UCD033R_D03_BE499251Sn30P012D03P025C071R1_025.ab1   (55)   363   232 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.1       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  32 nodes

 18 str. conn. components

Path
    1  C UCD033R_D03_BE499251Sn30P012D03P025C071R1_025.ab1   418 
   59    UCD033F_D03_BE499251Sn30P012D03P025C071F1_025.ab1     7 
  178  C UCD033R_D03_BE499251Sn30P012D03P025C071R1_025.ab1   241 
Contig length: old 418, new 418

Contig length: old 418, new 418
New start: 0 
S Change at: 99; seg lengths: entry 1, contig 1