No. words: 570; after pruning: 544


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -1.6 -1.6 (1,1:331)  102 12.27 0.00 0.00  UCD033F_E03_BE499251Sn31P012D03P025C071F1_023.ab1        1   163 (1)  C UCD033R_E03_BE499251Sn31P012D03P025C071R1_023.ab1   (74)   332   170 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.6       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  38 nodes

 21 str. conn. components

Path
    1  C UCD033R_E03_BE499251Sn31P012D03P025C071R1_023.ab1   406 
   78    UCD033F_E03_BE499251Sn31P012D03P025C071F1_023.ab1     4 
  171  C UCD033R_E03_BE499251Sn31P012D03P025C071R1_023.ab1   236 
  175    UCD033F_E03_BE499251Sn31P012D03P025C071F1_023.ab1   101 
  179  C UCD033R_E03_BE499251Sn31P012D03P025C071R1_023.ab1   228 
  203    UCD033F_E03_BE499251Sn31P012D03P025C071F1_023.ab1   129 
  207  C UCD033R_E03_BE499251Sn31P012D03P025C071R1_023.ab1   200 
  211    UCD033F_E03_BE499251Sn31P012D03P025C071F1_023.ab1   137 
  219  C UCD033R_E03_BE499251Sn31P012D03P025C071R1_023.ab1   188 
Contig length: old 406, new 406

Contig length: old 406, new 406
New start: 0 
S Change at: 89; seg lengths: entry 1, contig 1
S Change at: 231; seg lengths: entry 1, contig 1