No. words: 1005; after pruning: 979


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:430)  428  0.00 0.00 0.00  UCD015F_A03_BE499251Sn31P025H06P012D091F1_031.ab1        1   431 (76)  C UCD015R_A03_BE499251Sn31P025H06P012D091R1_031.ab1   (67)   431     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD015R_A03_BE499251Sn31P025H06P012D091R1_031.ab1   498 
   76    UCD015F_A03_BE499251Sn31P025H06P012D091F1_031.ab1     9 
   80  C UCD015R_A03_BE499251Sn31P025H06P012D091R1_031.ab1   419 
   84    UCD015F_A03_BE499251Sn31P025H06P012D091F1_031.ab1    17 
   96  C UCD015R_A03_BE499251Sn31P025H06P012D091R1_031.ab1   403 
  104    UCD015F_A03_BE499251Sn31P025H06P012D091F1_031.ab1    37 
  112  C UCD015R_A03_BE499251Sn31P025H06P012D091R1_031.ab1   387 
  120    UCD015F_A03_BE499251Sn31P025H06P012D091F1_031.ab1    53 
  140  C UCD015R_A03_BE499251Sn31P025H06P012D091R1_031.ab1   359 
  148    UCD015F_A03_BE499251Sn31P025H06P012D091F1_031.ab1    81 
  156  C UCD015R_A03_BE499251Sn31P025H06P012D091R1_031.ab1   343 
  160    UCD015F_A03_BE499251Sn31P025H06P012D091F1_031.ab1    93 
  464  C UCD015R_A03_BE499251Sn31P025H06P012D091R1_031.ab1    35 
  472    UCD015F_A03_BE499251Sn31P025H06P012D091F1_031.ab1   405 
Contig length: old 574, new 574

Contig length: old 574, new 574
New start: 0