No. words: 988; after pruning: 962


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:431)  428  0.00 0.00 0.00  UCD015F_A02_BE499251Ta19P025H06P012D091F1_016.ab1        1   432 (61)  C UCD015R_A02_BE499251Ta19P025H06P012D091R1_016.ab1   (63)   432     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD015R_A02_BE499251Ta19P025H06P012D091R1_016.ab1   495 
   87    UCD015F_A02_BE499251Ta19P025H06P012D091F1_016.ab1    24 
   91  C UCD015R_A02_BE499251Ta19P025H06P012D091R1_016.ab1   405 
  131    UCD015F_A02_BE499251Ta19P025H06P012D091F1_016.ab1    68 
  139  C UCD015R_A02_BE499251Ta19P025H06P012D091R1_016.ab1   357 
  159    UCD015F_A02_BE499251Ta19P025H06P012D091F1_016.ab1    96 
  175  C UCD015R_A02_BE499251Ta19P025H06P012D091R1_016.ab1   321 
  183    UCD015F_A02_BE499251Ta19P025H06P012D091F1_016.ab1   120 
  195  C UCD015R_A02_BE499251Ta19P025H06P012D091R1_016.ab1   301 
  203    UCD015F_A02_BE499251Ta19P025H06P012D091F1_016.ab1   140 
Contig length: old 556, new 556

Contig length: old 556, new 556
New start: 0