No. words: 993; after pruning: 967


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.4 (1,1:445)  435  0.00 0.23 0.00  UCD015F_E02_BE499251Ta23P025H06P012D091F1_008.ab1        1   443 (53)  C UCD015R_E02_BE499251Ta23P025H06P012D091R1_008.ab1   (50)   447     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD015R_E02_BE499251Ta23P025H06P012D091R1_008.ab1   497 
   73    UCD015F_E02_BE499251Ta23P025H06P012D091F1_008.ab1    22 
   77  C UCD015R_E02_BE499251Ta23P025H06P012D091R1_008.ab1   421 
   93    UCD015F_E02_BE499251Ta23P025H06P012D091F1_008.ab1    42 
  101  C UCD015R_E02_BE499251Ta23P025H06P012D091R1_008.ab1   397 
  145    UCD015F_E02_BE499251Ta23P025H06P012D091F1_008.ab1    94 
  149  C UCD015R_E02_BE499251Ta23P025H06P012D091R1_008.ab1   349 
  153    UCD015F_E02_BE499251Ta23P025H06P012D091F1_008.ab1   102 
  161  C UCD015R_E02_BE499251Ta23P025H06P012D091R1_008.ab1   337 
  169    UCD015F_E02_BE499251Ta23P025H06P012D091F1_008.ab1   118 
  465  C UCD015R_E02_BE499251Ta23P025H06P012D091R1_008.ab1    33 
  469    UCD015F_E02_BE499251Ta23P025H06P012D091F1_008.ab1   418 
Contig length: old 547, new 547

Contig length: old 547, new 547
New start: 0