No. words: 1005; after pruning: 979


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.5 (1,1:452)  434  0.22 0.22 0.22  UCD014F_E11_BE499251Td01P025H06P012D091F1_087.ab1        1   450 (52)  C UCD014R_E11_BE499251Td01P025H06P012D091R1_087.ab1   (50)   453     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD014R_E11_BE499251Td01P025H06P012D091R1_087.ab1   503 
  102    UCD014F_E11_BE499251Td01P025H06P012D091F1_087.ab1    51 
  106  C UCD014R_E11_BE499251Td01P025H06P012D091R1_087.ab1   398 
  134    UCD014F_E11_BE499251Td01P025H06P012D091F1_087.ab1    83 
  138  C UCD014R_E11_BE499251Td01P025H06P012D091R1_087.ab1   366 
  158    UCD014F_E11_BE499251Td01P025H06P012D091F1_087.ab1   107 
  206  C UCD014R_E11_BE499251Td01P025H06P012D091R1_087.ab1   298 
  250    UCD014F_E11_BE499251Td01P025H06P012D091F1_087.ab1   199 
  350  C UCD014R_E11_BE499251Td01P025H06P012D091R1_087.ab1   154 
  394    UCD014F_E11_BE499251Td01P025H06P012D091F1_087.ab1   343 
  442  C UCD014R_E11_BE499251Td01P025H06P012D091R1_087.ab1    62 
  450    UCD014F_E11_BE499251Td01P025H06P012D091F1_087.ab1   399 
  458  C UCD014R_E11_BE499251Td01P025H06P012D091R1_087.ab1    46 
  462    UCD014F_E11_BE499251Td01P025H06P012D091F1_087.ab1   411 
Contig length: old 552, new 553

Contig length: old 553, new 553
New start: 0