No. words: 1007; after pruning: 981


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.7 (1,1:453)  443  0.00 0.22 0.00  UCD014F_G11_BE499251Td03P025H06P012D091F1_083.ab1        1   451 (50)  C UCD014R_G11_BE499251Td03P025H06P012D091R1_083.ab1   (51)   455     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C UCD014R_G11_BE499251Td03P025H06P012D091R1_083.ab1   506 
  122    UCD014F_G11_BE499251Td03P025H06P012D091F1_083.ab1    70 
  130  C UCD014R_G11_BE499251Td03P025H06P012D091R1_083.ab1   377 
  150    UCD014F_G11_BE499251Td03P025H06P012D091F1_083.ab1    98 
  158  C UCD014R_G11_BE499251Td03P025H06P012D091R1_083.ab1   349 
  170    UCD014F_G11_BE499251Td03P025H06P012D091F1_083.ab1   118 
  174  C UCD014R_G11_BE499251Td03P025H06P012D091R1_083.ab1   333 
  178    UCD014F_G11_BE499251Td03P025H06P012D091F1_083.ab1   126 
  262  C UCD014R_G11_BE499251Td03P025H06P012D091R1_083.ab1   245 
  266    UCD014F_G11_BE499251Td03P025H06P012D091F1_083.ab1   214 
  414  C UCD014R_G11_BE499251Td03P025H06P012D091R1_083.ab1    93 
  422    UCD014F_G11_BE499251Td03P025H06P012D091F1_083.ab1   370 
  458  C UCD014R_G11_BE499251Td03P025H06P012D091R1_083.ab1    49 
  466    UCD014F_G11_BE499251Td03P025H06P012D091F1_083.ab1   414 
Contig length: old 553, new 553

Contig length: old 553, new 553
New start: 0