No. words: 1000; after pruning: 974


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.5 (1,1:452)  437  0.00 0.22 0.22  UCD014F_A12_BE499251Td05P025H06P012D091F1_096.ab1        1   450 (47)  C UCD014R_A12_BE499251Td05P025H06P012D091R1_096.ab1   (50)   453     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD014R_A12_BE499251Td05P025H06P012D091R1_096.ab1   503 
  121    UCD014F_A12_BE499251Td05P025H06P012D091F1_096.ab1    70 
  129  C UCD014R_A12_BE499251Td05P025H06P012D091R1_096.ab1   375 
  149    UCD014F_A12_BE499251Td05P025H06P012D091F1_096.ab1    98 
  161  C UCD014R_A12_BE499251Td05P025H06P012D091R1_096.ab1   343 
  165    UCD014F_A12_BE499251Td05P025H06P012D091F1_096.ab1   114 
  181  C UCD014R_A12_BE499251Td05P025H06P012D091R1_096.ab1   323 
  201    UCD014F_A12_BE499251Td05P025H06P012D091F1_096.ab1   150 
Contig length: old 547, new 548

Contig length: old 548, new 548
New start: 0