No. words: 1004; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.8 (1,1:455)  449  0.00 0.00 0.00  UCD014F_B12_BE499251Td06P025H06P012D091F1_094.ab1        2   453 (47)  C UCD014R_B12_BE499251Td06P025H06P012D091R1_094.ab1   (49)   455     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD014R_B12_BE499251Td06P025H06P012D091R1_094.ab1   504 
   97    UCD014F_B12_BE499251Td06P025H06P012D091F1_094.ab1    49 
  101  C UCD014R_B12_BE499251Td06P025H06P012D091R1_094.ab1   404 
  121    UCD014F_B12_BE499251Td06P025H06P012D091F1_094.ab1    73 
  129  C UCD014R_B12_BE499251Td06P025H06P012D091R1_094.ab1   376 
  149    UCD014F_B12_BE499251Td06P025H06P012D091F1_094.ab1   101 
  213  C UCD014R_B12_BE499251Td06P025H06P012D091R1_094.ab1   292 
  217    UCD014F_B12_BE499251Td06P025H06P012D091F1_094.ab1   169 
  365  C UCD014R_B12_BE499251Td06P025H06P012D091R1_094.ab1   140 
  373    UCD014F_B12_BE499251Td06P025H06P012D091F1_094.ab1   325 
  381  C UCD014R_B12_BE499251Td06P025H06P012D091R1_094.ab1   124 
  393    UCD014F_B12_BE499251Td06P025H06P012D091F1_094.ab1   345 
  413  C UCD014R_B12_BE499251Td06P025H06P012D091R1_094.ab1    92 
  421    UCD014F_B12_BE499251Td06P025H06P012D091F1_094.ab1   373 
  457  C UCD014R_B12_BE499251Td06P025H06P012D091R1_094.ab1    48 
  461    UCD014F_B12_BE499251Td06P025H06P012D091F1_094.ab1   413 
Contig length: old 548, new 548

Contig length: old 548, new 548
New start: 0