No. words: 1004; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.6 (1,1:453)  443  0.00 0.00 0.22  UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1        1   451 (50)  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   (50)   453     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   503 
   74    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1    24 
   78  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   426 
   86    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1    36 
   98  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   406 
  122    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1    72 
  126  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   378 
  150    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1   100 
  158  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   346 
  162    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1   112 
  166  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   338 
  174    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1   124 
  182  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   322 
  190    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1   140 
  258  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   246 
  262    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1   212 
  366  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   138 
  394    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1   344 
  402  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1   102 
  406    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1   356 
  454  C UCD014R_C12_BE499251Td07P025H06P012D091R1_092.ab1    50 
  458    UCD014F_C12_BE499251Td07P025H06P012D091F1_092.ab1   408 
Contig length: old 550, new 551

Contig length: old 551, new 551
New start: 0