No. words: 1159; after pruning: 1133


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 9.5 (1,1:546)  505  1.12 0.00 0.19  UCD017F_G07_BE499478AS02P028B02B081F1_051.ab1        1   536 (17)  C UCD017R_G07_BE499478AS02P028B02B081R1_051.ab1   (60)   546    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCD017R_G07_BE499478AS02P028B02B081R1_051.ab1   606 
   72    UCD017F_G07_BE499478AS02P028B02B081F1_051.ab1    12 
   76  C UCD017R_G07_BE499478AS02P028B02B081R1_051.ab1   531 
  152    UCD017F_G07_BE499478AS02P028B02B081F1_051.ab1    92 
  160  C UCD017R_G07_BE499478AS02P028B02B081R1_051.ab1   447 
  180    UCD017F_G07_BE499478AS02P028B02B081F1_051.ab1   120 
  184  C UCD017R_G07_BE499478AS02P028B02B081R1_051.ab1   423 
  192    UCD017F_G07_BE499478AS02P028B02B081F1_051.ab1   132 
  196  C UCD017R_G07_BE499478AS02P028B02B081R1_051.ab1   411 
Contig length: old 612, new 606

Contig length: old 606, new 606
New start: 0