No. words: 1455; after pruning: 1429


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.5 (1,1:570)  557  0.00 0.18 0.00  UCD017F_C08_BE499478LD02P028B02B081F1_060.ab1        4   571 (175)  C UCD017R_C08_BE499478LD02P028B02B081R1_060.ab1   (140)   569     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C UCD017R_C08_BE499478LD02P028B02B081R1_060.ab1   709 
  555    UCD017F_C08_BE499478LD02P028B02B081F1_060.ab1   417 
Contig length: old 884, new 884

Contig length: old 884, new 884
New start: 0