No. words: 1294; after pruning: 1268


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:545)  532  0.55 0.00 0.00  UCD017F_D08_BE499478LD03P028B02B081F1_058.ab1        1   546 (83)  C UCD017R_D08_BE499478LD03P028B02B081R1_058.ab1   (119)   546     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C UCD017R_D08_BE499478LD03P028B02B081R1_058.ab1   665 
  518    UCD017F_D08_BE499478LD03P028B02B081F1_058.ab1   399 
  522  C UCD017R_D08_BE499478LD03P028B02B081R1_058.ab1   144 
  554    UCD017F_D08_BE499478LD03P028B02B081F1_058.ab1   435 
  570  C UCD017R_D08_BE499478LD03P028B02B081R1_058.ab1    96 
  582    UCD017F_D08_BE499478LD03P028B02B081F1_058.ab1   463 
  590  C UCD017R_D08_BE499478LD03P028B02B081R1_058.ab1    76 
  619    UCD017F_D08_BE499478LD03P028B02B081F1_058.ab1   500 
  636  C UCD017R_D08_BE499478LD03P028B02B081R1_058.ab1    30 
  652    UCD017F_D08_BE499478LD03P028B02B081F1_058.ab1   533 
Contig length: old 748, new 748

Contig length: old 748, new 748
New start: 0