No. words: 1061; after pruning: 1035


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:571)  471  0.61 0.00 0.00  UCD017F_H08_BE499478LD07P028B02B081F1_050.ab1       55   543 (0)  C UCD017R_H08_BE499478LD07P028B02B081R1_050.ab1   (0)   518    30 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1    UCD017F_H08_BE499478LD07P028B02B081F1_050.ab1     1 
  310  C UCD017R_H08_BE499478LD07P028B02B081R1_050.ab1   263 
  522    UCD017F_H08_BE499478LD07P028B02B081F1_050.ab1   522 
  531  C UCD017R_H08_BE499478LD07P028B02B081R1_050.ab1    42 
Contig length: old 572, new 572

Contig length: old 572, new 572
New start: 0