No. words: 1385; after pruning: 1359


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.3 (1,1:573)  553  0.35 0.18 0.00  UCD017F_C09_BE499478LD10P028B02B081F1_075.ab1        4   574 (173)  C UCD017R_C09_BE499478LD10P028B02B081R1_075.ab1   (66)   572     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C UCD017R_C09_BE499478LD10P028B02B081R1_075.ab1   638 
   85    UCD017F_C09_BE499478LD10P028B02B081F1_075.ab1    21 
   97  C UCD017R_C09_BE499478LD10P028B02B081R1_075.ab1   542 
  121    UCD017F_C09_BE499478LD10P028B02B081F1_075.ab1    57 
  133  C UCD017R_C09_BE499478LD10P028B02B081R1_075.ab1   506 
  145    UCD017F_C09_BE499478LD10P028B02B081F1_075.ab1    81 
  153  C UCD017R_C09_BE499478LD10P028B02B081R1_075.ab1   486 
  169    UCD017F_C09_BE499478LD10P028B02B081F1_075.ab1   105 
  177  C UCD017R_C09_BE499478LD10P028B02B081R1_075.ab1   462 
  181    UCD017F_C09_BE499478LD10P028B02B081F1_075.ab1   117 
  205  C UCD017R_C09_BE499478LD10P028B02B081R1_075.ab1   434 
  341    UCD017F_C09_BE499478LD10P028B02B081F1_075.ab1   277 
  389  C UCD017R_C09_BE499478LD10P028B02B081R1_075.ab1   250 
  517    UCD017F_C09_BE499478LD10P028B02B081F1_075.ab1   453 
Contig length: old 811, new 811

Contig length: old 811, new 811
New start: 0