No. words: 853; after pruning: 827


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:468)  270  0.00 0.00 0.00  UCD017F_D09_BE499478LD11P028B02B081F1_073.ab1        1   282 (0)  C UCD017R_D09_BE499478LD11P028B02B081R1_073.ab1   (102)   469   188 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1  C UCD017R_D09_BE499478LD11P028B02B081R1_073.ab1   571 
  106    UCD017F_D09_BE499478LD11P028B02B081F1_073.ab1     4 
  114  C UCD017R_D09_BE499478LD11P028B02B081R1_073.ab1   458 
  118    UCD017F_D09_BE499478LD11P028B02B081F1_073.ab1    16 
  150  C UCD017R_D09_BE499478LD11P028B02B081R1_073.ab1   422 
  154    UCD017F_D09_BE499478LD11P028B02B081F1_073.ab1    52 
  162  C UCD017R_D09_BE499478LD11P028B02B081R1_073.ab1   410 
  178    UCD017F_D09_BE499478LD11P028B02B081F1_073.ab1    76 
  182  C UCD017R_D09_BE499478LD11P028B02B081R1_073.ab1   390 
  258    UCD017F_D09_BE499478LD11P028B02B081F1_073.ab1   156 
  270  C UCD017R_D09_BE499478LD11P028B02B081R1_073.ab1   302 
Contig length: old 571, new 571

Contig length: old 571, new 571
New start: 0