No. words: 1198; after pruning: 1158


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:561)  455  0.00 0.00 0.00  UCD017F_E09_BE499478LD12P028B02B081F1_071.ab1      100   562 (173)  C UCD017R_E09_BE499478LD12P028B02B081R1_071.ab1   (0)   463     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1    UCD017F_E09_BE499478LD12P028B02B081F1_071.ab1     1 
  275  C UCD017R_E09_BE499478LD12P028B02B081R1_071.ab1   288 
  407    UCD017F_E09_BE499478LD12P028B02B081F1_071.ab1   407 
  439  C UCD017R_E09_BE499478LD12P028B02B081R1_071.ab1   124 
  447    UCD017F_E09_BE499478LD12P028B02B081F1_071.ab1   447 
  475  C UCD017R_E09_BE499478LD12P028B02B081R1_071.ab1    88 
  487    UCD017F_E09_BE499478LD12P028B02B081F1_071.ab1   487 
  527  C UCD017R_E09_BE499478LD12P028B02B081R1_071.ab1    36 
  531    UCD017F_E09_BE499478LD12P028B02B081F1_071.ab1   531 
Contig length: old 735, new 735

Contig length: old 735, new 735
New start: 0 
S Change at: 614; seg lengths: entry 1, contig 1