No. words: 1551; after pruning: 1525


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 12.6 (1,1:624)  605  0.16 0.00 0.16  UCD017F_C06_BE500206LD01P028G01G071F1_044.ab1        5   625 (159)  C UCD017R_C06_BE500206LD01P028G01G071R1_044.ab1   (147)   620     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C UCD017R_C06_BE500206LD01P028G01G071R1_044.ab1   767 
  204    UCD017F_C06_BE500206LD01P028G01G071F1_044.ab1    61 
  208  C UCD017R_C06_BE500206LD01P028G01G071R1_044.ab1   560 
  332    UCD017F_C06_BE500206LD01P028G01G071F1_044.ab1   189 
  624  C UCD017R_C06_BE500206LD01P028G01G071R1_044.ab1   144 
  632    UCD017F_C06_BE500206LD01P028G01G071F1_044.ab1   489 
  640  C UCD017R_C06_BE500206LD01P028G01G071R1_044.ab1   128 
  656    UCD017F_C06_BE500206LD01P028G01G071F1_044.ab1   513 
  704  C UCD017R_C06_BE500206LD01P028G01G071R1_044.ab1    64 
  708    UCD017F_C06_BE500206LD01P028G01G071F1_044.ab1   565 
  724  C UCD017R_C06_BE500206LD01P028G01G071R1_044.ab1    44 
  728    UCD017F_C06_BE500206LD01P028G01G071F1_044.ab1   585 
Contig length: old 926, new 927

Contig length: old 927, new 927
New start: 0