No. words: 1168; after pruning: 1142


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:609)  477  0.40 0.20 0.00  UCD017F_F06_BE500206LD04P028G01G071F1_038.ab1        1   494 (0)  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   (63)   611   117 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   674 
   81    UCD017F_F06_BE500206LD04P028G01G071F1_038.ab1    17 
   89  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   586 
   93    UCD017F_F06_BE500206LD04P028G01G071F1_038.ab1    29 
  105  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   570 
  142    UCD017F_F06_BE500206LD04P028G01G071F1_038.ab1    78 
  154  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   521 
  166    UCD017F_F06_BE500206LD04P028G01G071F1_038.ab1   102 
  170  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   505 
  186    UCD017F_F06_BE500206LD04P028G01G071F1_038.ab1   122 
  198  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   477 
  218    UCD017F_F06_BE500206LD04P028G01G071F1_038.ab1   154 
  266  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   409 
  274    UCD017F_F06_BE500206LD04P028G01G071F1_038.ab1   210 
  298  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   377 
  302    UCD017F_F06_BE500206LD04P028G01G071F1_038.ab1   238 
  326  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   349 
  346    UCD017F_F06_BE500206LD04P028G01G071F1_038.ab1   282 
  354  C UCD017R_F06_BE500206LD04P028G01G071R1_038.ab1   321 
Contig length: old 674, new 674

Contig length: old 674, new 674
New start: 0