No. words: 1445; after pruning: 1419


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.9 (1,1:615)  598  0.16 0.16 0.00  UCD017F_A07_BE500206LD07P028G01G071F1_063.ab1        5   616 (181)  C UCD017R_A07_BE500206LD07P028G01G071R1_063.ab1   (35)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C UCD017R_A07_BE500206LD07P028G01G071R1_063.ab1   648 
   47    UCD017F_A07_BE500206LD07P028G01G071F1_063.ab1    15 
  138  C UCD017R_A07_BE500206LD07P028G01G071R1_063.ab1   511 
  150    UCD017F_A07_BE500206LD07P028G01G071F1_063.ab1   118 
  602  C UCD017R_A07_BE500206LD07P028G01G071R1_063.ab1    47 
  606    UCD017F_A07_BE500206LD07P028G01G071F1_063.ab1   574 
Contig length: old 829, new 829

Contig length: old 829, new 829
New start: 0