No. words: 1085; after pruning: 1059


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.9 (1,1:625)  438  0.87 0.00 0.00  UCD017F_B07_BE500206LD08P028G01G071F1_061.ab1       98   555 (0)  C UCD017R_B07_BE500206LD08P028G01G071R1_061.ab1   (1)   529    72 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1    UCD017F_B07_BE500206LD08P028G01G071F1_061.ab1     1 
  268  C UCD017R_B07_BE500206LD08P028G01G071R1_061.ab1   359 
  284    UCD017F_B07_BE500206LD08P028G01G071F1_061.ab1   284 
  308  C UCD017R_B07_BE500206LD08P028G01G071R1_061.ab1   319 
Contig length: old 626, new 626

Contig length: old 626, new 626
New start: 0