No. words: 1479; after pruning: 1439


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 12.5 (1,1:632)  612  0.16 0.16 0.16  UCD017F_C07_BE500206LD09P028G01G071F1_059.ab1        5   632 (130)  C UCD017R_C07_BE500206LD09P028G01G071R1_059.ab1   (88)   629     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C UCD017R_C07_BE500206LD09P028G01G071R1_059.ab1   717 
  106    UCD017F_C07_BE500206LD09P028G01G071F1_059.ab1    21 
  134  C UCD017R_C07_BE500206LD09P028G01G071R1_059.ab1   584 
  226    UCD017F_C07_BE500206LD09P028G01G071F1_059.ab1   141 
  654  C UCD017R_C07_BE500206LD09P028G01G071R1_059.ab1    64 
  662    UCD017F_C07_BE500206LD09P028G01G071F1_059.ab1   577 
Contig length: old 846, new 847

Contig length: old 847, new 847
New start: 0 
S Change at: 102; seg lengths: entry 1, contig 1