No. words: 1179; after pruning: 1153


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   12    0.0 8.5 (1,1:555)  528  0.00 0.00 0.18  UCD034F_F02_BE500206Sn24P028G01P036F111F1_006.ab1        3   544 (38)  C UCD034R_F02_BE500206Sn24P028G01P036F111R1_006.ab1   (44)   553    13 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
12       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C UCD034R_F02_BE500206Sn24P028G01P036F111R1_006.ab1   597 
   92    UCD034F_F02_BE500206Sn24P028G01P036F111F1_006.ab1    50 
   96  C UCD034R_F02_BE500206Sn24P028G01P036F111R1_006.ab1   502 
  156    UCD034F_F02_BE500206Sn24P028G01P036F111F1_006.ab1   114 
  164  C UCD034R_F02_BE500206Sn24P028G01P036F111R1_006.ab1   434 
  192    UCD034F_F02_BE500206Sn24P028G01P036F111F1_006.ab1   150 
  340  C UCD034R_F02_BE500206Sn24P028G01P036F111R1_006.ab1   258 
  428    UCD034F_F02_BE500206Sn24P028G01P036F111F1_006.ab1   386 
Contig length: old 623, new 624

Contig length: old 624, new 624
New start: 0