No. words: 1016; after pruning: 990


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.4 (1,1:453)  433  0.00 0.66 0.00  UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1        1   453 (61)  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1   (46)   456     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1   502 
  146    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1    97 
  154  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1   349 
  194    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1   145 
  206  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1   297 
  222    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1   173 
  246  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1   257 
  254    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1   205 
  270  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1   233 
  366    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1   317 
  370  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1   133 
  382    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1   333 
  390  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1   113 
  394    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1   345 
  402  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1   101 
  406    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1   357 
  418  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1    85 
  422    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1   373 
  454  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1    49 
  458    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1   409 
  470  C UCD034R_F06_BE500206Sn24P036H11P028G071R1_038.ab1    33 
  478    UCD034F_F06_BE500206Sn24P036H11P028G071F1_038.ab1   429 
Contig length: old 562, new 563

Contig length: old 563, new 563
New start: 0