No. words: 1174; after pruning: 1148


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.9 (1,1:534)  519  0.00 0.00 0.19  UCD034F_G02_BE500206Sn25P028G01P036F111F1_004.ab1        1   532 (56)  C UCD034R_G02_BE500206Sn25P028G01P036F111R1_004.ab1   (52)   534     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C UCD034R_G02_BE500206Sn25P028G01P036F111R1_004.ab1   586 
   96    UCD034F_G02_BE500206Sn25P028G01P036F111F1_004.ab1    44 
  100  C UCD034R_G02_BE500206Sn25P028G01P036F111R1_004.ab1   487 
  160    UCD034F_G02_BE500206Sn25P028G01P036F111F1_004.ab1   108 
  168  C UCD034R_G02_BE500206Sn25P028G01P036F111R1_004.ab1   419 
  180    UCD034F_G02_BE500206Sn25P028G01P036F111F1_004.ab1   128 
  188  C UCD034R_G02_BE500206Sn25P028G01P036F111R1_004.ab1   399 
  196    UCD034F_G02_BE500206Sn25P028G01P036F111F1_004.ab1   144 
  280  C UCD034R_G02_BE500206Sn25P028G01P036F111R1_004.ab1   307 
  292    UCD034F_G02_BE500206Sn25P028G01P036F111F1_004.ab1   240 
  388  C UCD034R_G02_BE500206Sn25P028G01P036F111R1_004.ab1   199 
  396    UCD034F_G02_BE500206Sn25P028G01P036F111F1_004.ab1   344 
  400  C UCD034R_G02_BE500206Sn25P028G01P036F111R1_004.ab1   187 
  404    UCD034F_G02_BE500206Sn25P028G01P036F111F1_004.ab1   352 
  480  C UCD034R_G02_BE500206Sn25P028G01P036F111R1_004.ab1   107 
  488    UCD034F_G02_BE500206Sn25P028G01P036F111F1_004.ab1   436 
  496  C UCD034R_G02_BE500206Sn25P028G01P036F111R1_004.ab1    91 
  500    UCD034F_G02_BE500206Sn25P028G01P036F111F1_004.ab1   448 
Contig length: old 639, new 640

Contig length: old 640, new 640
New start: 0