No. words: 1171; after pruning: 1145


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.9 (1,1:533)  518  0.00 0.00 0.19  UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1        1   531 (56)  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   (51)   533     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   584 
   92    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1    41 
  104  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   481 
  112    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1    61 
  136  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   449 
  152    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   101 
  164  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   421 
  196    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   145 
  200  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   385 
  204    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   153 
  240  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   345 
  248    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   197 
  260  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   325 
  264    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   213 
  280  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   305 
  292    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   241 
  332  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   253 
  336    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   285 
  340  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   245 
  360    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   309 
  380  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   205 
  408    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   357 
  416  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   169 
  432    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   381 
  444  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   141 
  448    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   397 
  460  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1   125 
  472    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   421 
  496  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1    89 
  504    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   453 
  532  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1    53 
  536    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   485 
  544  C UCD034R_H02_BE500206Sn26P028G01P036F111R1_002.ab1    41 
  556    UCD034F_H02_BE500206Sn26P028G01P036F111F1_002.ab1   505 
Contig length: old 637, new 638

Contig length: old 638, new 638
New start: 0