No. words: 1153; after pruning: 1127


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:528)  520  0.00 0.00 0.00  UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1        1   529 (45)  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   (50)   529     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   579 
   91    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1    41 
   95  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   485 
   99    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1    49 
  103  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   477 
  119    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1    69 
  135  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   445 
  143    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1    93 
  147  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   433 
  151    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   101 
  199  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   381 
  203    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   153 
  243  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   337 
  251    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   201 
  279  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   301 
  291    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   241 
  383  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   197 
  391    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   341 
  403  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   177 
  407    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   357 
  415  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   165 
  431    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   381 
  459  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   121 
  471    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   421 
  479  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1   101 
  483    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   433 
  495  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1    85 
  503    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   453 
  519  C UCD034R_B03_BE500206Sn28P028G01P036F111R1_029.ab1    61 
  523    UCD034F_B03_BE500206Sn28P028G01P036F111F1_029.ab1   473 
Contig length: old 624, new 624

Contig length: old 624, new 624
New start: 0