No. words: 1159; after pruning: 1133


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.1 (1,1:531)  516  0.00 0.19 0.00  UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1        1   529 (48)  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   (49)   533     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   582 
   88    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1    38 
  100  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   483 
  112    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1    62 
  136  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   447 
  156    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   106 
  164  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   419 
  176    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   126 
  184  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   399 
  192    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   142 
  196  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   387 
  204    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   154 
  208  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   375 
  212    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   162 
  232  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   351 
  248    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   198 
  260  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   323 
  272    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   222 
  276  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   307 
  288    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   238 
  300  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   283 
  308    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   258 
  340  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   243 
  348    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   298 
  356  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   227 
  360    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   310 
  380  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   203 
  404    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   354 
  412  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   171 
  424    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   374 
  456  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   127 
  468    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   418 
  476  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1   107 
  480    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   430 
  492  C UCD034R_C03_BE500206Sn29P028G01P036F111R1_027.ab1    91 
  500    UCD034F_C03_BE500206Sn29P028G01P036F111F1_027.ab1   450 
Contig length: old 627, new 627

Contig length: old 627, new 627
New start: 0