No. words: 1321; after pruning: 1295


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.8 (1,1:621)  600  0.00 0.16 0.16  UCD017F_E05_BE500206TU01P028G01G071F1_039.ab1        1   620 (35)  C UCD017R_E05_BE500206TU01P028G01G071R1_039.ab1   (44)   622     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C UCD017R_E05_BE500206TU01P028G01G071R1_039.ab1   666 
   80    UCD017F_E05_BE500206TU01P028G01G071F1_039.ab1    35 
   88  C UCD017R_E05_BE500206TU01P028G01G071R1_039.ab1   579 
   92    UCD017F_E05_BE500206TU01P028G01G071F1_039.ab1    47 
  100  C UCD017R_E05_BE500206TU01P028G01G071R1_039.ab1   567 
  112    UCD017F_E05_BE500206TU01P028G01G071F1_039.ab1    67 
  120  C UCD017R_E05_BE500206TU01P028G01G071R1_039.ab1   547 
  148    UCD017F_E05_BE500206TU01P028G01G071F1_039.ab1   103 
  156  C UCD017R_E05_BE500206TU01P028G01G071R1_039.ab1   511 
  160    UCD017F_E05_BE500206TU01P028G01G071F1_039.ab1   115 
  176  C UCD017R_E05_BE500206TU01P028G01G071R1_039.ab1   491 
  580    UCD017F_E05_BE500206TU01P028G01G071F1_039.ab1   535 
  592  C UCD017R_E05_BE500206TU01P028G01G071R1_039.ab1    75 
  648    UCD017F_E05_BE500206TU01P028G01G071F1_039.ab1   603 
Contig length: old 699, new 700

Contig length: old 700, new 700
New start: 0