No. words: 1288; after pruning: 1262


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.4 (1,1:583)  565  0.00 0.17 0.00  UCD017F_F05_BE500206TU02P028G01G071F1_037.ab1        4   584 (64)  C UCD017R_F05_BE500206TU02P028G01G071R1_037.ab1   (58)   582     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C UCD017R_F05_BE500206TU02P028G01G071R1_037.ab1   640 
  223    UCD017F_F05_BE500206TU02P028G01G071F1_037.ab1   167 
  399  C UCD017R_F05_BE500206TU02P028G01G071R1_037.ab1   242 
  511    UCD017F_F05_BE500206TU02P028G01G071F1_037.ab1   455 
  519  C UCD017R_F05_BE500206TU02P028G01G071R1_037.ab1   122 
  535    UCD017F_F05_BE500206TU02P028G01G071F1_037.ab1   479 
  575  C UCD017R_F05_BE500206TU02P028G01G071R1_037.ab1    66 
  579    UCD017F_F05_BE500206TU02P028G01G071F1_037.ab1   523 
  603  C UCD017R_F05_BE500206TU02P028G01G071R1_037.ab1    38 
  615    UCD017F_F05_BE500206TU02P028G01G071F1_037.ab1   559 
  619  C UCD017R_F05_BE500206TU02P028G01G071R1_037.ab1    22 
  631    UCD017F_F05_BE500206TU02P028G01G071F1_037.ab1   575 
Contig length: old 704, new 704

Contig length: old 704, new 704
New start: 0