No. words: 1148; after pruning: 1122


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:512)  499  0.39 0.00 0.00  UCD034F_B01_BE500206Ta12P028G01P036F111F1_013.ab1        1   513 (60)  C UCD034R_B01_BE500206Ta12P028G01P036F111R1_013.ab1   (62)   513     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCD034R_B01_BE500206Ta12P028G01P036F111R1_013.ab1   575 
  130    UCD034F_B01_BE500206Ta12P028G01P036F111F1_013.ab1    68 
  134  C UCD034R_B01_BE500206Ta12P028G01P036F111R1_013.ab1   442 
  155    UCD034F_B01_BE500206Ta12P028G01P036F111F1_013.ab1    93 
  159  C UCD034R_B01_BE500206Ta12P028G01P036F111R1_013.ab1   417 
  163    UCD034F_B01_BE500206Ta12P028G01P036F111F1_013.ab1   101 
  199  C UCD034R_B01_BE500206Ta12P028G01P036F111R1_013.ab1   377 
  203    UCD034F_B01_BE500206Ta12P028G01P036F111F1_013.ab1   141 
  355  C UCD034R_B01_BE500206Ta12P028G01P036F111R1_013.ab1   221 
  367    UCD034F_B01_BE500206Ta12P028G01P036F111F1_013.ab1   305 
Contig length: old 635, new 635

Contig length: old 635, new 635
New start: 0