No. words: 1137; after pruning: 1111


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:517)  510  0.00 0.00 0.00  UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1        1   518 (47)  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   (54)   518     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   572 
   95    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1    41 
  103  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   470 
  119    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1    65 
  135  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   438 
  147    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1    93 
  151  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   422 
  155    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1   101 
  159  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   414 
  163    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1   109 
  167  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   406 
  207    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1   153 
  247  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   326 
  255    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1   201 
  347  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   226 
  367    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1   313 
  399  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   174 
  407    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1   353 
  451  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   122 
  455    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1   401 
  463  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1   110 
  471    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1   417 
  495  C UCD034R_C01_BE500206Ta13P028G01P036F111R1_011.ab1    78 
  503    UCD034F_C01_BE500206Ta13P028G01P036F111F1_011.ab1   449 
Contig length: old 619, new 619

Contig length: old 619, new 619
New start: 0