No. words: 1151; after pruning: 1125


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:516)  500  0.00 0.39 0.00  UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1        1   516 (55)  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1   (62)   518     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1   580 
  105    UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1    41 
  109  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1   472 
  125    UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1    61 
  141  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1   440 
  161    UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1    97 
  177  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1   404 
  205    UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1   141 
  209  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1   372 
  217    UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1   153 
  301  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1   280 
  309    UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1   245 
  357  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1   224 
  369    UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1   305 
  397  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1   184 
  417    UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1   353 
  449  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1   132 
  457    UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1   393 
  501  C UCD034R_D01_BE500206Ta14P028G01P036F111R1_009.ab1    80 
  513    UCD034F_D01_BE500206Ta14P028G01P036F111F1_009.ab1   449 
Contig length: old 634, new 635

Contig length: old 635, new 635
New start: 0