No. words: 1159; after pruning: 1133


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.5 (1,1:534)  519  0.00 0.00 0.19  UCD034F_F01_BE500206Ta16P028G01P036F111F1_005.ab1        1   532 (43)  C UCD034R_F01_BE500206Ta16P028G01P036F111R1_005.ab1   (50)   534     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C UCD034R_F01_BE500206Ta16P028G01P036F111R1_005.ab1   584 
   94    UCD034F_F01_BE500206Ta16P028G01P036F111F1_005.ab1    44 
   98  C UCD034R_F01_BE500206Ta16P028G01P036F111R1_005.ab1   487 
  194    UCD034F_F01_BE500206Ta16P028G01P036F111F1_005.ab1   144 
  342  C UCD034R_F01_BE500206Ta16P028G01P036F111R1_005.ab1   243 
  362    UCD034F_F01_BE500206Ta16P028G01P036F111F1_005.ab1   312 
  386  C UCD034R_F01_BE500206Ta16P028G01P036F111R1_005.ab1   199 
  406    UCD034F_F01_BE500206Ta16P028G01P036F111F1_005.ab1   356 
Contig length: old 624, new 625

Contig length: old 625, new 625
New start: 0