No. words: 1009; after pruning: 969


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:442)  425  0.23 0.23 0.23  UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1        1   443 (62)  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   (61)   443     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   504 
   78    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1    16 
   82  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   423 
   90    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1    28 
   94  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   411 
  114    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1    52 
  122  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   383 
  166    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   104 
  170  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   335 
  174    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   112 
  202  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   303 
  222    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   160 
  226  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   279 
  234    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   172 
  246  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   259 
  338    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   276 
  346  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   159 
  354    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   292 
  362  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   143 
  370    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   308 
  378  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1   127 
  386    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   324 
  406  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1    99 
  410    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   348 
  418  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1    87 
  422    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   360 
  426  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1    79 
  434    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   372 
  446  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1    59 
  450    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   388 
  462  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1    43 
  466    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   404 
  474  C UCD034R_G05_BE500206Ta17P036H11P028G071R1_035.ab1    31 
  478    UCD034F_G05_BE500206Ta17P036H11P028G071F1_035.ab1   416 
Contig length: old 566, new 567

Contig length: old 567, new 566
New start: 0 
D Change at: 71; seg lengths: entry 3, contig 4