No. words: 1139; after pruning: 1113


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.7 (1,1:517)  498  0.58 0.00 0.00  UCD034F_H01_BE500206Ta18P028G01P036F111F1_001.ab1        1   515 (46)  C UCD034R_H01_BE500206Ta18P028G01P036F111R1_001.ab1   (60)   518     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C UCD034R_H01_BE500206Ta18P028G01P036F111R1_001.ab1   578 
  159    UCD034F_H01_BE500206Ta18P028G01P036F111F1_001.ab1    99 
  195  C UCD034R_H01_BE500206Ta18P028G01P036F111R1_001.ab1   384 
  211    UCD034F_H01_BE500206Ta18P028G01P036F111F1_001.ab1   151 
  231  C UCD034R_H01_BE500206Ta18P028G01P036F111R1_001.ab1   348 
  243    UCD034F_H01_BE500206Ta18P028G01P036F111F1_001.ab1   183 
  351  C UCD034R_H01_BE500206Ta18P028G01P036F111R1_001.ab1   228 
  371    UCD034F_H01_BE500206Ta18P028G01P036F111F1_001.ab1   311 
  395  C UCD034R_H01_BE500206Ta18P028G01P036F111R1_001.ab1   184 
  423    UCD034F_H01_BE500206Ta18P028G01P036F111F1_001.ab1   363 
  447  C UCD034R_H01_BE500206Ta18P028G01P036F111R1_001.ab1   132 
  451    UCD034F_H01_BE500206Ta18P028G01P036F111F1_001.ab1   391 
Contig length: old 621, new 621

Contig length: old 621, new 621
New start: 0