No. words: 1004; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 4.9 (1,1:452)  430  0.00 0.45 0.00  UCD034F_H05_BE500206Ta18P036H11P028G071F1_033.ab1        7   452 (51)  C UCD034R_H05_BE500206Ta18P036H11P028G071R1_033.ab1   (53)   448     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD034R_H05_BE500206Ta18P036H11P028G071R1_033.ab1   501 
   77    UCD034F_H05_BE500206Ta18P036H11P028G071F1_033.ab1    28 
   81  C UCD034R_H05_BE500206Ta18P036H11P028G071R1_033.ab1   421 
  213    UCD034F_H05_BE500206Ta18P036H11P028G071F1_033.ab1   164 
  217  C UCD034R_H05_BE500206Ta18P036H11P028G071R1_033.ab1   285 
  225    UCD034F_H05_BE500206Ta18P036H11P028G071F1_033.ab1   176 
  229  C UCD034R_H05_BE500206Ta18P036H11P028G071R1_033.ab1   273 
  281    UCD034F_H05_BE500206Ta18P036H11P028G071F1_033.ab1   232 
  285  C UCD034R_H05_BE500206Ta18P036H11P028G071R1_033.ab1   217 
  293    UCD034F_H05_BE500206Ta18P036H11P028G071F1_033.ab1   244 
  301  C UCD034R_H05_BE500206Ta18P036H11P028G071R1_033.ab1   201 
  333    UCD034F_H05_BE500206Ta18P036H11P028G071F1_033.ab1   284 
  349  C UCD034R_H05_BE500206Ta18P036H11P028G071R1_033.ab1   153 
  377    UCD034F_H05_BE500206Ta18P036H11P028G071F1_033.ab1   328 
  441  C UCD034R_H05_BE500206Ta18P036H11P028G071R1_033.ab1    61 
  445    UCD034F_H05_BE500206Ta18P036H11P028G071F1_033.ab1   396 
  473  C UCD034R_H05_BE500206Ta18P036H11P028G071R1_033.ab1    29 
  477    UCD034F_H05_BE500206Ta18P036H11P028G071F1_033.ab1   428 
Contig length: old 551, new 552

Contig length: old 552, new 552
New start: 0