No. words: 1130; after pruning: 1104


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.7 (1,1:519)  511  0.00 0.00 0.00  UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1        1   519 (42)  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   (49)   520     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   569 
   57    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1     8 
   65  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   505 
   81    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1    32 
  101  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   469 
  109    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1    60 
  113  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   457 
  117    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1    68 
  133  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   437 
  145    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1    96 
  189  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   381 
  193    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   144 
  197  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   373 
  205    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   156 
  241  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   329 
  245    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   196 
  253  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   317 
  265    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   216 
  341  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   229 
  349    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   300 
  373  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   197 
  389    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   340 
  425  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   145 
  429    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   380 
  445  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   125 
  449    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   400 
  461  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1   109 
  473    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   424 
  481  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1    89 
  485    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   436 
  489  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1    81 
  501    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   452 
  545  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1    25 
  549    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   500 
  553  C UCD034R_B02_BE500206Ta20P028G01P036F111R1_014.ab1    17 
  561    UCD034F_B02_BE500206Ta20P028G01P036F111F1_014.ab1   512 
Contig length: old 610, new 610

Contig length: old 610, new 610
New start: 0