No. words: 1145; after pruning: 1119


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.0 (1,1:519)  510  0.00 0.00 0.00  UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1        1   518 (55)  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   (52)   520     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   572 
   93    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1    41 
  101  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   472 
  129    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1    77 
  137  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   436 
  145    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1    93 
  165  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   408 
  181    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   129 
  189  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   384 
  197    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   145 
  221  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   352 
  225    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   173 
  245  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   328 
  253    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   201 
  285  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   288 
  293    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   241 
  297  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   276 
  333    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   281 
  341  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   232 
  365    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   313 
  369  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   204 
  405    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   353 
  413  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   160 
  417    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   365 
  421  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   152 
  433    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   381 
  441  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   132 
  453    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   401 
  461  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1   112 
  469    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   417 
  477  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1    96 
  501    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   449 
  513  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1    60 
  525    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   473 
  533  C UCD034R_C02_BE500206Ta21P028G01P036F111R1_012.ab1    40 
  537    UCD034F_C02_BE500206Ta21P028G01P036F111F1_012.ab1   485 
Contig length: old 625, new 625

Contig length: old 625, new 625
New start: 0