No. words: 1135; after pruning: 1109


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.9 (1,1:520)  511  0.00 0.00 0.00  UCD034F_D02_BE500206Ta22P028G01P036F111F1_010.ab1        1   519 (42)  C UCD034R_D02_BE500206Ta22P028G01P036F111R1_010.ab1   (53)   521     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C UCD034R_D02_BE500206Ta22P028G01P036F111R1_010.ab1   574 
  149    UCD034F_D02_BE500206Ta22P028G01P036F111F1_010.ab1    96 
  161  C UCD034R_D02_BE500206Ta22P028G01P036F111R1_010.ab1   414 
  165    UCD034F_D02_BE500206Ta22P028G01P036F111F1_010.ab1   112 
  169  C UCD034R_D02_BE500206Ta22P028G01P036F111R1_010.ab1   406 
  197    UCD034F_D02_BE500206Ta22P028G01P036F111F1_010.ab1   144 
  281  C UCD034R_D02_BE500206Ta22P028G01P036F111R1_010.ab1   294 
  297    UCD034F_D02_BE500206Ta22P028G01P036F111F1_010.ab1   244 
  345  C UCD034R_D02_BE500206Ta22P028G01P036F111R1_010.ab1   230 
  365    UCD034F_D02_BE500206Ta22P028G01P036F111F1_010.ab1   312 
  389  C UCD034R_D02_BE500206Ta22P028G01P036F111R1_010.ab1   186 
  397    UCD034F_D02_BE500206Ta22P028G01P036F111F1_010.ab1   344 
  481  C UCD034R_D02_BE500206Ta22P028G01P036F111R1_010.ab1    94 
  493    UCD034F_D02_BE500206Ta22P028G01P036F111F1_010.ab1   440 
Contig length: old 614, new 614

Contig length: old 614, new 614
New start: 0